.     Home Academics Research Events Resources   MBC   By subject     Bioinformatics     Biology     Computational Biolog     Ethics     Genomics     Information Science     Metabolomics     Proteomics     Text Mining   By technology   Professional   Interest groups Contacts Jobs Calendar   . Information Science Resources Categories The following links are categorized to make them more accessible: Show All | Hide All Text/Documents:   Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits (2006) (Online version) Dessimoz et al., Institute for Computational Science at Zurich       Correct orthology assignment is a critical prerequisite of numerous comparative genomics procedures, such as function prediction, construction of phylogenetic species trees and genome rearrangement analysis. We present an algorithm for the detection of non-orthologs that arise by mistake in current orthology classification methods based on genome-specific best hits, such as the COGs database. The algorithm works with pairwise distance estimates...   Automatically annotating documents with normalized gene lists (2005) (PDF, 234KB, 7pgs) Crim et al., University of Pennsylvania       Document gene normalization is the problem of creating a list of unique identifiers for genes that are mentioned within a document. Automating this process has many potential applications in both information extraction and database curation systems. Here we present two separate solutions to this problem...   Software Downloads:   SOFTWARE (SIZE) DESCRIPTION   Slide Presentations:   A Short Introduction to Unix Stuart M. Brown, 2006 Bioinformatics Requires Powerful Computers/Unix Runs the Internet/Unix Advantages/General Unix Tips/The Unix Shell/Unix Commands/Wildcards...   Perl: Regular Expressions Stuart M. Brown, 2006 Patterns in Biology/grep/Perl Regular Expressions/The Match Operator/Alternative Characters...   Video Lectures:   Continuous Queries over Data Streams      May 26, 2005   Perspectives on the Information Industry      May 26, 2005   Location Enhanced Web Services      December 24, 2003   The Google Linux Cluster      November 5, 2002   Machine Learning Methods for Structured and Collective Classification      April 3, 2006   Applications of Approximate Inference Techniques for Optimal Design in Self-Assembly and Automated Programming      March 22, 2006   Tractable Learning of Structured Prediction Models      April 12, 2006   Medical Imaging: Innovation, Integration and Improvement      May 8, 2006   e-Science and Cyberinfrastructure      November 8, 2005   Machine Learning Methods for Discovery of Regulatory Elements in Bacteria      February 3, 2005   Blending Biology and Robotics      December 2004   Dealing with Data: Classification, Clustering and Ranking      April 11, 2006   Sample Scripts:   null   Sample Data:   null   General Web Resources:   TITLE - DESCRIPTION   Site Recommendations Do you know of any resources of interest or ways to make this page more informative? Let us know about it!   .   . Site map | Privacy policy | Webmaster | AR BRIN Copyright © 2004-2009 Donaghey College of Information Science and Systems Engineering Created and maintained by MidSouth Bioinformatics Center   This page was created on September 23, 2009.